News
Maura joins the Team as PhD Student
Maura will work on novel bioinformatics and machine learning techniques to gain a better understanding of genotype-phenotype relationships.
Article in “Research in Germany” about Dr. Richa Bharti
We are happy to share an interview Richa gave for the portal “Research in Germany”. In this interview Richa gave insights about her research in Germany, and what she likes about living here.
New Publication in Plant Methods
New publication about “Accurate machine learning-based germination detection, prediction and quality assessment of three grain crops” just got published in Plant Methods.
Our proposed machine learning-based method can help to speed up the assessment of seed germination experiments for different seed cultivars. It has lower error rates and a higher performance compared to conventional and manual methods, leading to more accurate germination indices and quality assessments of seeds.
New Publication in Bioinformatics
New publication about “Network-guided search for genetic heterogeneity between gene pairs” just got published in Bioinformatics: https://academic.oup.com/bioinformatics/advance-article/doi/10.1093/bioinformatics/btaa581/5861532
We propose a novel method for finding pairs of interacting genes that are, upon combination, associated with a phenotype of interest under a model of genetic heterogeneity. We guide the interaction search using biological prior knowledge in the form of protein-protein interaction networks. Our method controls type I error and outperforms state-of-the-art methods with respect to statistical power. Additionally, we find novel associations for multiple A. thaliana phenotypes, and for a study of rare variants in migraine patients.
Wissenschaftler sagen Tulpen-Müllbergen den Kampf an
Zierpflanzen, Stauden oder Schnittblumen sind hierzulande extrem beliebt, vor allem in der Woche vor Muttertag brummt das Geschäft. Dieses Jahr allerdings ist die Nachfrage nach Blumenschmuck oder Sträußen trotz Muttertag eingebrochen, weil aufgrund der Corona-Pandemie viele Veranstaltungen wie Hochzeiten abgesagt wurden. Das Problem, dass die Nachfrage nach gärtnerischen Produkten stark von externen Faktoren wie Witterung, Feiertagen, regionalen Veranstaltungen oder anderen – oftmals noch unbekannten – Einflussfaktoren abhängig ist, besteht für viele Wertschöpfungsketten im Gartenbau.
Florian joins the Team as PhD Student
Florian will work on novel machine learning methods to predict the turnover and requisition of medium sized companies in horticulture
Nikita joins the team as scientific assistant
Nikita Genze joins our team as research assistant. He will work on novel machine learning methods for automatic and improved weed detection in Sorghum using drones.
Two new research projects are funded!
We are pleased to announce that two new research projects will be funded by the Federal Office for Agriculture and Food as well as the Bayerisches Staatsministerium für Ernährung, Landwirtschaft und Forsten.
New Publication in Briefings in Bioinformatics
We are pleased to announce our new review paper describing challenges in amplicon and metagenomics sequencing, which has just been published in Briefings in Bioinformatics (https://doi.org/10.1093/bib/bbz155).
New Publication in Nucleic Acids Research
We are pleased to announce the next generation of the online resources AraPheno (https://arapheno.1001genomes.org) and the AraGWAS Catalog (https://aragwas.1001genomes.org) which has just been published in the journal Nucleic Acids Research (https://academic.oup.com/nar/advance-article/doi/10.1093/nar/gkz925/5603218). AraPheno is a central and manually curated repository for high-quality phenotypes for the model organism Arabidopsis thaliana. As of September 2019 AraPheno contains more than 462 publicly available phenotypes, making it the largest data resource for population-scale phenotypes in A. thaliana, by far. With this release, AraPheno has been extended to support RNA-Seq expression profiles for thousands of samples and genes.